CRAN Package Check Results for Package DUBStepR

Last updated on 2021-12-04 22:59:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 7.98 248.60 256.58 OK
r-devel-linux-x86_64-debian-gcc 1.2.0 6.49 187.96 194.45 OK
r-devel-linux-x86_64-fedora-clang 1.2.0 319.35 OK
r-devel-linux-x86_64-fedora-gcc 1.2.0 308.85 OK
r-devel-windows-x86_64-new-UL 1.2.0 18.00 332.00 350.00 OK
r-devel-windows-x86_64-new-TK 1.2.0 OK
r-devel-windows-x86_64-old 1.2.0 13.00 236.00 249.00 OK
r-patched-linux-x86_64 1.2.0 8.41 241.05 249.46 OK
r-release-linux-x86_64 1.2.0 6.84 246.75 253.59 OK
r-release-macos-arm64 1.2.0 OK
r-release-macos-x86_64 1.2.0 OK
r-release-windows-ix86+x86_64 1.2.0 20.00 313.00 333.00 OK
r-oldrel-macos-x86_64 1.2.0 OK
r-oldrel-windows-ix86+x86_64 1.2.0 19.00 95.00 114.00 ERROR

Check Details

Version: 1.2.0
Check: examples
Result: ERROR
    Running examples in 'DUBStepR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: DUBStepR
    > ### Title: DUBStepR - Obtain a list of feature genes to characterise cell
    > ### types
    > ### Aliases: DUBStepR
    >
    > ### ** Examples
    >
    > res <- DUBStepR(input.data = pbmc_norm_small_data)
    
    Running DUBStepR...
    Dimensions of input data: 230 x 80
    
    Expression Filtering Done.
    Mitochondrial, Ribosomal and Pseudo Genes Filtering Done.
    Dimensions of filtered data: 218 x 80
    
    Computing GGC...
    Done.
    
    Running Stepwise Regression...
    
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    Done.
    
    Adding correlated features...
    
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    Done.
    Determining optimal feature set...
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     namespace 'Matrix' 1.3-2 is already loaded, but >= 1.3.3 is required
    Calls: DUBStepR -> getOptimalFeatureSet
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'dub-vignette.Rmd' using rmarkdown
    Loading required package: DUBStepR
    Quitting from lines 50-52 (dub-vignette.Rmd)
    Error: processing vignette 'dub-vignette.Rmd' failed with diagnostics:
    package or namespace load failed for 'Seurat' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
     namespace 'Matrix' 1.3-2 is already loaded, but >= 1.3.3 is required
    --- failed re-building 'dub-vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'dub-vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64