CRAN Package Check Results for Package ic50

Last updated on 2021-11-29 22:59:14 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.2 3.90 39.88 43.78 NOTE
r-devel-linux-x86_64-debian-gcc 1.4.2 3.10 31.43 34.53 NOTE
r-devel-linux-x86_64-fedora-clang 1.4.2 65.86 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4.2 54.71 NOTE
r-devel-windows-x86_64-new-UL 1.4.2 8.00 76.00 84.00 NOTE
r-devel-windows-x86_64-new-TK 1.4.2 NOTE
r-devel-windows-x86_64-old 1.4.2 6.00 46.00 52.00 NOTE
r-patched-linux-x86_64 1.4.2 4.27 39.62 43.89 NOTE
r-patched-solaris-x86 1.4.2 80.10 NOTE
r-release-linux-x86_64 1.4.2 4.10 39.68 43.78 NOTE
r-release-macos-arm64 1.4.2 NOTE
r-release-macos-x86_64 1.4.2 NOTE
r-release-windows-ix86+x86_64 1.4.2 7.00 44.00 51.00 NOTE
r-oldrel-macos-x86_64 1.4.2 NOTE
r-oldrel-windows-ix86+x86_64 1.4.2 6.00 48.00 54.00 NOTE

Check Details

Version: 1.4.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'tcltk' which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: 'tcltk'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4.2
Check: R code for possible problems
Result: NOTE
    catch.exceptions.384: no visible global function definition for
     'read.delim'
    catch.exceptions.384: no visible global function definition for
     'write.table'
    catch.exceptions.96: no visible global function definition for
     'read.delim'
    catch.exceptions.96: no visible global function definition for
     'write.table'
    control.edit: no visible global function definition for 'read.delim'
    control.edit: no visible global function definition for 'edit'
    control.edit: no visible global function definition for 'write.table'
    defaultfiles.write: no visible global function definition for 'data'
    defaultfiles.write: no visible global function definition for
     'write.table'
    dilution.edit: no visible global function definition for 'read.delim'
    dilution.edit: no visible global function definition for 'edit'
    dilution.edit: no visible global function definition for 'write.table'
    evaluation: no visible global function definition for 'sd'
    evaluation: no visible global function definition for 'var'
    evaluation: no visible global function definition for 'qt'
    evaluation: no visible global function definition for 'pdf'
    evaluation: no visible global function definition for 'dev.off'
    evaluation: no visible global function definition for 'write.table'
    fittedplot: no visible global function definition for 'axis'
    fittedplot: no visible global function definition for 'lines'
    hts.384: no visible global function definition for 'pdf'
    hts.384: no visible global function definition for 'dev.off'
    hts.384: no visible global function definition for 'write.table'
    hts.96: no visible global function definition for 'pdf'
    hts.96: no visible global function definition for 'dev.off'
    hts.96: no visible global function definition for 'write.table'
    ic50: no visible global function definition for 'tktoplevel'
    ic50: no visible global function definition for 'tkwm.title'
    ic50: no visible global function definition for 'tkradiobutton'
    ic50: no visible global function definition for 'tclVar'
    ic50: no visible global function definition for 'tkconfigure'
    ic50: no visible global function definition for 'tkentry'
    ic50 : onIndirBrowse: no visible global function definition for
     'tclvalue<-'
    ic50 : onIndirBrowse: no visible global function definition for
     'tclvalue'
    ic50 : onIndirBrowse: no visible global function definition for
     'tkchooseDirectory'
    ic50: no visible global function definition for 'tkbutton'
    ic50 : onMeasureBrowse: no visible global function definition for
     'tclvalue<-'
    ic50 : onMeasureBrowse: no visible global function definition for
     'tclvalue'
    ic50 : onMeasureBrowse: no visible global function definition for
     'tkgetOpenFile'
    ic50 : onControlBrowse: no visible global function definition for
     'tclvalue<-'
    ic50 : onControlBrowse: no visible global function definition for
     'tclvalue'
    ic50 : onControlBrowse: no visible global function definition for
     'tkgetOpenFile'
    ic50 : onDilutionBrowse: no visible global function definition for
     'tclvalue<-'
    ic50 : onDilutionBrowse: no visible global function definition for
     'tclvalue'
    ic50 : onDilutionBrowse: no visible global function definition for
     'tkgetOpenFile'
    ic50 : onOutdirBrowse: no visible global function definition for
     'tclvalue<-'
    ic50 : onOutdirBrowse: no visible global function definition for
     'tclvalue'
    ic50 : onOutdirBrowse: no visible global function definition for
     'tkchooseDirectory'
    ic50 : onCompute: no visible global function definition for 'tclvalue'
    ic50 : onCompute: no visible global function definition for 'tclVar'
    ic50 : onCompute: no visible global function definition for 'tkdestroy'
    ic50 : <anonymous>: no visible global function definition for
     'tkdestroy'
    ic50 : onMeasureEdit: no visible global function definition for
     'tclvalue'
    ic50 : onControlEdit: no visible global function definition for
     'tclvalue'
    ic50 : onDilutionEdit: no visible global function definition for
     'tclvalue'
    ic50 : onInhibPerc: no visible global function definition for
     'tclvalue'
    ic50 : onInhibPerc: no visible global function definition for
     'read.delim'
    ic50 : onInhibPerc: no visible global function definition for 'edit'
    ic50: no visible global function definition for 'tkgrid'
    ic50: no visible global function definition for 'tklabel'
    ic50: no visible global function definition for 'tkfocus'
    ic50: no visible global function definition for 'tkwait.window'
    ic50.384: no visible global function definition for 'read.delim'
    ic50.96: no visible global function definition for 'read.delim'
    meanplot: no visible global function definition for 'axis'
    meanplot: no visible global function definition for 'lines'
    measure.edit: no visible global function definition for 'read.delim'
    measure.edit: no visible global function definition for 'edit'
    measure.edit: no visible global function definition for 'write.table'
    singleplot: no visible global function definition for 'axis'
    singleplot: no visible global function definition for 'lines'
    Undefined global functions or variables:
     axis data dev.off edit lines pdf qt read.delim sd tclVar tclvalue
     tclvalue<- tkbutton tkchooseDirectory tkconfigure tkdestroy tkentry
     tkfocus tkgetOpenFile tkgrid tklabel tkradiobutton tktoplevel
     tkwait.window tkwm.title var write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "axis", "lines")
     importFrom("stats", "qt", "sd", "var")
     importFrom("utils", "data", "edit", "read.delim", "write.table")
    to your NAMESPACE file.
    
    Found the following calls to data() loading into the global environment:
    File 'ic50/R/misc.R':
     data("default384_measure")
     data("default384_control")
     data("default384_dilution")
     data("default96_measure")
     data("default96_control")
     data("default96_dilution")
    See section 'Good practice' in '?data'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.4.2
Check: Rd line widths
Result: NOTE
    Rd file 'hts.Rd':
     \examples lines wider than 100 characters:
     measure="mpi384_measure.txt",control="mpi384_control.txt",dilution="mpi384_dilution.txt",
    
    Rd file 'ic50.Rd':
     \examples lines wider than 100 characters:
     measure="mpi384_measure.txt",control="mpi384_control.txt",dilution="mpi384_dilution.txt",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.4.2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     '.last384_control.txt' '.last384_dilution.txt' '.last384_measure.txt'
     '.last96_control.txt' '.last96_dilution.txt' '.last96_measure.txt'
     'HCC2429_1.txt' 'HCC2429_2.txt' 'HCC2429_results' 'NSCLC_results'
     'NSCLC_screen' 'mpi384_control.txt' 'mpi384_dilution.txt'
     'mpi384_measure.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.4.2
Check: R code for possible problems
Result: NOTE
    catch.exceptions.384: no visible global function definition for
     ‘read.delim’
    catch.exceptions.384: no visible global function definition for
     ‘write.table’
    catch.exceptions.96: no visible global function definition for
     ‘read.delim’
    catch.exceptions.96: no visible global function definition for
     ‘write.table’
    control.edit: no visible global function definition for ‘read.delim’
    control.edit: no visible global function definition for ‘edit’
    control.edit: no visible global function definition for ‘write.table’
    defaultfiles.write: no visible global function definition for ‘data’
    defaultfiles.write: no visible global function definition for
     ‘write.table’
    dilution.edit: no visible global function definition for ‘read.delim’
    dilution.edit: no visible global function definition for ‘edit’
    dilution.edit: no visible global function definition for ‘write.table’
    evaluation: no visible global function definition for ‘sd’
    evaluation: no visible global function definition for ‘var’
    evaluation: no visible global function definition for ‘qt’
    evaluation: no visible global function definition for ‘pdf’
    evaluation: no visible global function definition for ‘dev.off’
    evaluation: no visible global function definition for ‘write.table’
    fittedplot: no visible global function definition for ‘axis’
    fittedplot: no visible global function definition for ‘lines’
    hts.384: no visible global function definition for ‘pdf’
    hts.384: no visible global function definition for ‘dev.off’
    hts.384: no visible global function definition for ‘write.table’
    hts.96: no visible global function definition for ‘pdf’
    hts.96: no visible global function definition for ‘dev.off’
    hts.96: no visible global function definition for ‘write.table’
    ic50: no visible global function definition for ‘tktoplevel’
    ic50: no visible global function definition for ‘tkwm.title’
    ic50: no visible global function definition for ‘tkradiobutton’
    ic50: no visible global function definition for ‘tclVar’
    ic50: no visible global function definition for ‘tkconfigure’
    ic50: no visible global function definition for ‘tkentry’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tkchooseDirectory’
    ic50: no visible global function definition for ‘tkbutton’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tkchooseDirectory’
    ic50 : onCompute: no visible global function definition for ‘tclvalue’
    ic50 : onCompute: no visible global function definition for ‘tclVar’
    ic50 : onCompute: no visible global function definition for ‘tkdestroy’
    ic50 : <anonymous>: no visible global function definition for
     ‘tkdestroy’
    ic50 : onMeasureEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onControlEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onDilutionEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onInhibPerc: no visible global function definition for
     ‘tclvalue’
    ic50 : onInhibPerc: no visible global function definition for
     ‘read.delim’
    ic50 : onInhibPerc: no visible global function definition for ‘edit’
    ic50: no visible global function definition for ‘tkgrid’
    ic50: no visible global function definition for ‘tklabel’
    ic50: no visible global function definition for ‘tkfocus’
    ic50: no visible global function definition for ‘tkwait.window’
    ic50.384: no visible global function definition for ‘read.delim’
    ic50.96: no visible global function definition for ‘read.delim’
    meanplot: no visible global function definition for ‘axis’
    meanplot: no visible global function definition for ‘lines’
    measure.edit: no visible global function definition for ‘read.delim’
    measure.edit: no visible global function definition for ‘edit’
    measure.edit: no visible global function definition for ‘write.table’
    singleplot: no visible global function definition for ‘axis’
    singleplot: no visible global function definition for ‘lines’
    Undefined global functions or variables:
     axis data dev.off edit lines pdf qt read.delim sd tclVar tclvalue
     tclvalue<- tkbutton tkchooseDirectory tkconfigure tkdestroy tkentry
     tkfocus tkgetOpenFile tkgrid tklabel tkradiobutton tktoplevel
     tkwait.window tkwm.title var write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "axis", "lines")
     importFrom("stats", "qt", "sd", "var")
     importFrom("utils", "data", "edit", "read.delim", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64