UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.

Version: 1.4.0
Depends: R (≥ 3.0)
Imports: ggplot2, gridExtra, plyr, utils, stats, methods, grDevices, scales
Suggests: knitr
Published: 2019-05-22
Author: Jake Conway [cre], Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway at hms.harvard.edu>
BugReports: http://github.com/hms-dbmi/UpSetR/issues
License: MIT + file LICENSE
URL: http://github.com/hms-dbmi/UpSetR
NeedsCompilation: no
Materials: README NEWS
CRAN checks: UpSetR results

Documentation:

Reference manual: UpSetR.pdf
Vignettes: Attribute Plots
Basic Usage
Querying the Data
Incorporating Set Metadata

Downloads:

Package source: UpSetR_1.4.0.tar.gz
Windows binaries: r-devel: UpSetR_1.4.0.zip, r-release: UpSetR_1.4.0.zip, r-oldrel: UpSetR_1.4.0.zip
macOS binaries: r-release (arm64): UpSetR_1.4.0.tgz, r-oldrel (arm64): UpSetR_1.4.0.tgz, r-release (x86_64): UpSetR_1.4.0.tgz
Old sources: UpSetR archive

Reverse dependencies:

Reverse depends: SummarizedBenchmark
Reverse imports: artMS, ASpli, biblioverlap, bulkAnalyseR, DiscoRhythm, iCOBRA, ideal, ivygapSE, LymphoSeq, MAGAR, MatrixQCvis, mpwR, MultiRNAflow, naniar, plinkQC, PTXQC, QCAcluster, rimu, seqsetvis, TOmicsVis, VennDetail, ViSEAGO
Reverse suggests: Cepo, ChIPpeakAnno, distinct, GeneSelectR, HMP2Data, mastR, MetaNeighbor, miceFast, MultiAssayExperiment, MungeSumstats, muscat, OmicNavigator, pcutils, SingleCellMultiModal, spatialHeatmap, systemPipeShiny, TFutils

Linking:

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