segclust2d: Bivariate Segmentation/Clustering Methods and Tools

Provides two methods for segmentation and joint segmentation/clustering of bivariate time-series. Originally intended for ecological segmentation (home-range and behavioural modes) but easily applied on other series, the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'. The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT' (Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>). This method rely on dynamic programming for efficient segmentation. The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm. This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method (formerly available in 'cghseg' package) to the bivariate case. The method is fully described in Patin et al (2018) <doi:10.1101/444794>.

Version: 0.3.0
Depends: R (≥ 3.3.0)
Imports: RColorBrewer (≥ 1.1-2), dplyr (≥ 1.0.0), plyr (≥ 1.8.4), reshape2 (≥ 1.4.1), ggplot2 (≥ 2.1.0), magrittr, Rcpp, zoo, grDevices, graphics, stats, utils, scales, rlang, methods, cli
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, dygraphs (≥ 1.1.1-1), xts (≥ 0.9-7), leaflet (≥ 1.0.1), sp (≥ 1.2-3), adehabitatLT, depmixS4, moveHMM (≥ 1.2), htmltools, move, devtools, spelling
Published: 2021-10-11
Author: Remi Patin [aut, cre], Marie-Pierre Etienne [aut], Emilie Lebarbier [aut], Simon Benhamou [aut]
Maintainer: Remi Patin <remi.patin at normale.fr>
BugReports: https://github.com/rpatin/segclust2d/issues
License: GPL-3
URL: https://github.com/rpatin/segclust2d
NeedsCompilation: yes
Language: en-US
Citation: segclust2d citation info
Materials: README
In views: Tracking
CRAN checks: segclust2d results

Documentation:

Reference manual: segclust2d.pdf
Vignettes: 1 - Preparing data for Segmentation/Clustering with segclust2d
2 - Running Segmentation/Clustering with segclust2d
3 - Exploring Outputs from segclust2d

Downloads:

Package source: segclust2d_0.3.0.tar.gz
Windows binaries: r-devel: segclust2d_0.3.0.zip, r-devel-UCRT: segclust2d_0.3.0.zip, r-release: segclust2d_0.3.0.zip, r-oldrel: segclust2d_0.3.0.zip
macOS binaries: r-release (arm64): segclust2d_0.2.0.tgz, r-release (x86_64): segclust2d_0.3.0.tgz, r-oldrel: segclust2d_0.3.0.tgz
Old sources: segclust2d archive

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